Here is the second version of my file. I know it's rather soon but it's necessary to fix some errors Besides, I get off on being obsessive-compulsive, LOL!
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Now to explain the changes of my second draft of my Pre-IE theory. I recently remembered that the last time I had left the topic of Indo-Aegean Sibilantization, I had already renamed it Word-Final Lenition because word-final *-k may also have been reduced to a glottal stop at around the same time. Miguel Vidal had theorized something similar and I've come to grow fond of this spin on his ideas.
I then rearranged the order of some changes in the Indo-Aegean section and added a very important sound change: Centralization. Centralization is the idea that an originally 3-dimensional vowel system was "centralized" and reduced to a 2-dimensional system. This new system that had developed would have had only a contrast in height between *a and *ə. This is also the point at which labialized stops first surface in the language. I suspect that this was an innovation spurred on by contact with an ancestral form of Proto-Abkhaz-Adyghe (aka Northwest Caucasian). This hypothesis is largely based on Allan Bomhard's theories on Nostratic and Pre-IE with a few notable twists and extra details which I've mentioned in the newest version of the pdf.
For Phoenix, I've added a few PIE examples (*wástu and *márḱos) to add support to the Labial Dissimilation Exception of Vowel Shift at the end of Late IE. Time will tell whether there are good objections against my hypothesis though.
I also corrected my error concerning "Root Aorists" in the Post-IE section since, based on the example I provided, obviously I meant to say "Thematic Aorist". Mea culpa. Thank you, Rob, for spotting that and asking questions. Verb forms like *likʷét "she left" and *widét "she knew" are now considered by Indo-Europeanists as a later innovation that can't be reconstructed for the Proto-IE stage.
 Miguel Carrasquer Vidal, "Re: [tied] Dissimilation of gW/kWVw to gVw/kVw", Cybalist (Yahoogroups) (Apr 19 2005) (see link). Here, he proposed that *-ku > *-kʷ > PIE *-h₃ while final *-ki > *-h₁. I feel that this is unnecessarily complex but that the idea of the dual ending evolving as *-ak > *-aʔ > PIE *-(i)h₁/*-e (via Laryngeal Vocalization) entoxicates me since it could potentially explain the relationship between PIE's dual on the one hand and Uralic *-k(V) & EA *-k on the other. Lenition already explains the connection between PIE *-es and Uralic plural marker in *-t.
 Bomhard, Indo-European and the Nostratic Hypothesis (1996).